PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028051254.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 174aa    MW: 19671.8 Da    PI: 7.2482
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028051254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-3861061101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dCvlapyf a++p++f +vhk++Gasnv+kll++lp + r +a++s+v+eA  r++dPvyG++++i++l+qq+ q++ e+a
  XP_028051254.1   6 RCAACKYLRRRCSQDCVLAPYFQANNPERFSCVHKIYGASNVTKLLEQLPVDLRANAVDSMVFEASSRIQDPVYGCTQIIFQLRQQIIQTQYEIA 100
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  XP_028051254.1 101 QIQAQI 106
                     999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MSNSTRCAAC KYLRRRCSQD CVLAPYFQAN NPERFSCVHK IYGASNVTKL LEQLPVDLRA  60
NAVDSMVFEA SSRIQDPVYG CTQIIFQLRQ QIIQTQYEIA QIQAQIAFNN VQQQMHHQQR  120
YHHGNQYQNQ HHSVGGGGGG GGGEPFSQTW MNASEQAEEQ HSHLGFTSDF NFTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.18e-38LBD family protein