PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028051809.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 768aa MW: 85780.8 Da PI: 6.5089

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028051809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.3	3.5e-24	164	265	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+++++ +gD v+F + ++ XP_028051809.1 164 FCKTLTASDTSSHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGVEWRFRHIYRGQPRRHLLTTGWSTFVSQKNIVSGDAVLFL--RGEG 255 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_028051809.1 256 GELRLGIRRA 265 *****996 PP
2	Auxin_resp	106.6	2.7e-35	289	368	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+st+ F+v+Y+Pras++++vv+++k++k++++++ +G+Rfkm+f+ +ds+err G+v+g++dldp+rW+nSkWr+L XP_028051809.1 289 VANAISTNGSFHVFYSPRASHADYVVPYQKYVKSITNQIFIGTRFKMKFDVDDSPERR--GVVTGIRDLDPYRWRNSKWRCL 368 689*****************************************************..*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MEIDLNHAVV SEVEKKNACG NGGCDKDCGC FSSSTSSCSS NSSSSPAYSS ISMELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQSVSSSPF PPMEVTDFDL QPQIFCRVMD VQLLANKEND 120 EVYTQLTLLP LPELEVINLE GKGHGELGLD EEGVVTPTKT PHMFCKTLTA SDTSSHGGFS 180 VPRRAAEDCF PPLDYKQQRP SQELVARDLH GVEWRFRHIY RGQPRRHLLT TGWSTFVSQK 240 NIVSGDAVLF LRGEGGELRL GIRRAIRPRN GLPDSVLVNQ NYQNVLSPVA NAISTNGSFH 300 VFYSPRASHA DYVVPYQKYV KSITNQIFIG TRFKMKFDVD DSPERRGVVT GIRDLDPYRW 360 RNSKWRCLMV RWDESIVSDR QERVSPWEID PSVSLPPLSI QSSPRLKKLR MGLQPTPPDN 420 PIAGGGKFLD FEESVRSSKV LQGQENAGLL SPLYGCDKSN CPLDFEMQSI VHQSLASNGT 480 EKANFREFMM SQPPTTYTGF MESSRFPKVL QGQEICSLRS LTGKTDRNFF NIHQRPKPNF 540 YPLASEGVRS MYFPYSEIYK AGHDPVMLSH MTNFPSDNVP FNGSSIQSGH PRDEVRKPNL 600 PNEPLQGMLA APPSSEANFK TPKDDTSNGS MDGCKLFGFS LIGETPNKRS CTKVHKQGSL 660 VGRAIDLSRL NGYNDLLIEL ERLFTMEGLL RDPDQGWRIL YTDSENDMMV VGDDPWHEFC 720 NVVSKIHIYT REEVEKMTIG VISDDTHSCL DVSKSPSVGQ PDSPPNIN

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MEIDLNHAVV SEVEKKNACG NGGCDKDCGC FSSSTSSCSS NSSSSPAYSS ISMELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQSVSSSPF PPMEVTDFDL QPQIFCRVMD VQLLANKEND  120
EVYTQLTLLP LPELEVINLE GKGHGELGLD EEGVVTPTKT PHMFCKTLTA SDTSSHGGFS  180
VPRRAAEDCF PPLDYKQQRP SQELVARDLH GVEWRFRHIY RGQPRRHLLT TGWSTFVSQK  240
NIVSGDAVLF LRGEGGELRL GIRRAIRPRN GLPDSVLVNQ NYQNVLSPVA NAISTNGSFH  300
VFYSPRASHA DYVVPYQKYV KSITNQIFIG TRFKMKFDVD DSPERRGVVT GIRDLDPYRW  360
RNSKWRCLMV RWDESIVSDR QERVSPWEID PSVSLPPLSI QSSPRLKKLR MGLQPTPPDN  420
PIAGGGKFLD FEESVRSSKV LQGQENAGLL SPLYGCDKSN CPLDFEMQSI VHQSLASNGT  480
EKANFREFMM SQPPTTYTGF MESSRFPKVL QGQEICSLRS LTGKTDRNFF NIHQRPKPNF  540
YPLASEGVRS MYFPYSEIYK AGHDPVMLSH MTNFPSDNVP FNGSSIQSGH PRDEVRKPNL  600
PNEPLQGMLA APPSSEANFK TPKDDTSNGS MDGCKLFGFS LIGETPNKRS CTKVHKQGSL  660
VGRAIDLSRL NGYNDLLIEL ERLFTMEGLL RDPDQGWRIL YTDSENDMMV VGDDPWHEFC  720
NVVSKIHIYT REEVEKMTIG VISDDTHSCL DVSKSPSVGQ PDSPPNIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein