PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028052123.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 905aa    MW: 100439 Da    PI: 6.4233
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028052123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.7e-2445146199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_028052123.1  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 135
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_028052123.1 136 KNQLLLGIRRA 146
                     9999****997 PP
2Auxin_resp117.51.1e-38171254183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F++++nPras+seFv++++k++ka + ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  XP_028052123.1 171 AAHAASTNSRFTIFFNPRASPSEFVIPLAKYVKAAYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 254
                     79******************************9998789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    
MHADVETDEV YAQMTLQPLS PEEQKDASFL PADLGAPSKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDFSQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KRLVAGDSVL FIWNEKNQLL LGIRRANRPQ TVMPSSVLSS DSMHLGLLAA AAHAASTNSR  180
FTIFFNPRAS PSEFVIPLAK YVKAAYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DSVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPLGLP  300
SFNGIKEDDL GMNSPLTWLR GDNVDHSIQS LNFQGISVTP WMQPRLDTSM LGMQTDIYQA  360
MAVSALQEMR AVDPSKQTHP SLLQFQQPQS FPSWPAGLMQ PQILQQSQPQ PVFLHSVKET  420
QSQSQAQAQS QSQSQSQSQS HLLQQQLQHQ HSFTNQHQHQ QPQISQQSQP QPVFLRSVKE  480
NQPKSQAQAQ AQSQSQSQSE SQSQSHLLQQ QLQHQHSFTN QHQHQQPQPA LLQQQQQQQQ  540
LVDHQQVSTV VSSLSQFASS SQTQSPSLQA ISSMCQQQSF SDSNGNPATN AIVSPLQSLI  600
GSFSHDEASH ILNLPRSDAL LSSAGWPPKR VAVDPLLPSA TSPCILPQVE QLGPPHTHTS  660
QNAISLPPFP GRECSIDQEG SNDPQNHLLF GVNIDSSSLL MQNGLSSIRG VGSDNDSTTV  720
PFASSPSNYV STTGTAGTDF SLNPVMTPSS CIDESGFLQS PENVGQANPP TRTFVKVYKL  780
GSFGRSLDIS KFSSYNELRS ELAGMFGLDG QLEDPVRSGW QLVFVDREND VLLLGDDPWQ  840
EFVNSVWCIK ILSPQEVQQM GKHGLELLNS VPIQRFSNSS CDDYTSQQDS RNLSSGIASV  900
GSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein