PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028052124.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 870aa    MW: 96352.6 Da    PI: 6.9969
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028052124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_028052124.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_028052124.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp117.61e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F++++nPras+seFv++++k++ka + ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  XP_028052124.1 254 AAHAASTNSRFTIFFNPRASPSEFVIPLAKYVKAAYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 337
                     79******************************9998789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    
MRFSSAGFTQ QSPEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
VDAHIPNHPS LSPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDA SFLPADLGAP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAST NSRFTIFFNP RASPSEFVIP LAKYVKAAYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPL GLPSFNGIKE DDLGMNSPLT WLRGDNVDHS IQSLNFQGIS  420
VTPWMQPRLD TSMLGMQTDI YQAMAVSALQ EMRAVDPSKQ THPSLLQFQQ PQSFPSWPAG  480
LMQPQILQQS QPQPVFLHSV KETQSQSQAQ AQSQSQSQSQ SQSHLLQQQL QHQHSFTNQH  540
QHQQPQISQQ SQPQPVFLRS VKENQPKSQA QAQAQSQSQS QSESQSQSHL LQQQLQHQHS  600
FTNQHQHQQP QPALLQQQQQ QQQLVDHQQV STVVSSLSQF ASSSQTQSPS LQAISSMCQQ  660
QSFSDSNGNP ATNAIVSPLQ SLIGSFSHDE ASHILNLPRS DALLSSAGWP PKRVAVDPLL  720
PSATSPCILP QVEQLGPPHT HTSQNAISLP PFPGRECSID QEGSNDPQNH LLFGVNIDSS  780
SLLMQNGLSS IRGVGSDNDS TTVPFASSPS NYVSTTGTAG TDFSLNPVMT PSSCIDESGF  840
LQSPENVGQA NPPTRTFVKI TRHLQIQQLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein