PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052192.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 28005.9 Da PI: 9.0339

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.6	6.1e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng++KKA+ELSvLCdaeva+i+fs++gklye++s XP_028052192.1 9 KRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	100.3	2.8e-33	84	173	11	100
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++ ++e+ +Lk+++e Lq++qR+llGedL++L+ keL qLe qLe+slkkiRs+K++++l+q+ +lq++e++l e nkaLr+klee XP_028052192.1 84 AIENQNNYHEYLRLKARVEILQQSQRNLLGEDLGPLNTKELDQLEYQLENSLKKIRSTKTQFMLDQLADLQRREQMLAESNKALRRKLEE 173 557899*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRGRVDLKR IENKINRQVT FAKRRNGLFK KAYELSVLCD AEVALIVFSN RGKLYEFCSG 60 SSMAKTLERY QRCSYDLLDP RQPAIENQNN YHEYLRLKAR VEILQQSQRN LLGEDLGPLN 120 TKELDQLEYQ LENSLKKIRS TKTQFMLDQL ADLQRREQML AESNKALRRK LEETTAENPL 180 QLSWEAGGQT MHYNRFPAQS EGFFQPLGLN STLQMGYNPM GTDEMNAAAP TQIANGFIPG 240 WML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-103	MIKC_MADS family protein