PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052932.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 606aa MW: 68585 Da PI: 6.821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	7.8e-12	416	461	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +ErrRR++i+++f L +l+P+ K++K++iL +++e++ +L XP_028052932.1 416 SHVLAERRRREKIKERFLVLGSLVPST-----NKVDKVSILDHTIEHLEEL 461 7999********************7.....5************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MASGHHNQWG VPENLRKQLA FAVRNIQWSY AVFWSISSRH PGVLEWGDGY YNGDIKTRRT 60 VQALEFNADR IGLLRSDQLR ELYESLAADE NWPQARRPSA ALSPEDLTDT EWYYLVCMSF 120 MFNIGQCLPG RTLANNQPIW LCNAPFADSK VFCRSLLAKS ASIQTVVCFP YLGGVIELGV 180 TELIVEDPSL IQHVLTSFLK IPFSVVSKTS RSVSGNAQYN KDCVYAKLDQ EILGVMEVCS 240 PNSSSNRTRL HQQAEELFMI EGLNDEISNC VNNSTSSSDC IPQTLINPEK VSPILKENGD 300 CLIERHEDNP MKMSSSDIQI DEIHYQSIVS TLLKSSHQLI LGPHFQNYNQ ESSFVSWKKG 360 GFAGIQMPKI GTPQRLVKKI LFEVARMHGD CLLDSREDNG RGDGLWIPQV DDINSSHVLA 420 ERRRREKIKE RFLVLGSLVP STNKVDKVSI LDHTIEHLEE LKRRVEELES CMVAKRQDSA 480 EWTSDNNGND HIGNRKKASK NKRKASDINE METEINRVLL KDKLTDNVTV STIEKDVVIE 540 IRCPWREFVL LEIVDAISRL HLDSHSVQST NIDGILSLTI KSKFKGSKIV STGMIRQTLQ 600 RLVQKN

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MASGHHNQWG VPENLRKQLA FAVRNIQWSY AVFWSISSRH PGVLEWGDGY YNGDIKTRRT  60
VQALEFNADR IGLLRSDQLR ELYESLAADE NWPQARRPSA ALSPEDLTDT EWYYLVCMSF  120
MFNIGQCLPG RTLANNQPIW LCNAPFADSK VFCRSLLAKS ASIQTVVCFP YLGGVIELGV  180
TELIVEDPSL IQHVLTSFLK IPFSVVSKTS RSVSGNAQYN KDCVYAKLDQ EILGVMEVCS  240
PNSSSNRTRL HQQAEELFMI EGLNDEISNC VNNSTSSSDC IPQTLINPEK VSPILKENGD  300
CLIERHEDNP MKMSSSDIQI DEIHYQSIVS TLLKSSHQLI LGPHFQNYNQ ESSFVSWKKG  360
GFAGIQMPKI GTPQRLVKKI LFEVARMHGD CLLDSREDNG RGDGLWIPQV DDINSSHVLA  420
ERRRREKIKE RFLVLGSLVP STNKVDKVSI LDHTIEHLEE LKRRVEELES CMVAKRQDSA  480
EWTSDNNGND HIGNRKKASK NKRKASDINE METEINRVLL KDKLTDNVTV STIEKDVVIE  540
IRCPWREFVL LEIVDAISRL HLDSHSVQST NIDGILSLTI KSKFKGSKIV STGMIRQTLQ  600
RLVQKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	421	426	ERRRRE
2	422	427	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-161	bHLH family protein