PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053034.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 225aa MW: 26612.9 Da PI: 9.975

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.7e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eEdell ++v+++G ++W+ I+r ++ gR++k+c++rw + XP_028053034.1 13 RVSWSPEEDELLQKLVHRHGARNWSIISRSVP-GRSAKSCRLRWCNQ 58 679***************************.*********985 PP
2	Myb_DNA-binding	52.1	1.5e-16	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd+++v+ ++++G++ W+tIar ++ Rt++ +k++w++ XP_028053034.1 67 PFTDEEDKIIVRSHQKYGNK-WATIARLLN-SRTDNAIKNHWNST 109 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MDNLSTTTES SIRVSWSPEE DELLQKLVHR HGARNWSIIS RSVPGRSAKS CRLRWCNQLS 60 PEVEHRPFTD EEDKIIVRSH QKYGNKWATI ARLLNSRTDN AIKNHWNSTL KRKCYDYRGR 120 SSEESVVERR KRVNATMNIR FSDERRLRSD VDPKDVPSTE LSLSQPGICS NELRITHQNR 180 TSTHQNRTSY HEITEFDSFQ LLLKEMVREK VKEEVRNYML QLEKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	132	KRKCYDYRGRSSEESVVERRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	5e-60	MYB family protein