PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053155.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 378aa MW: 43648.2 Da PI: 8.3722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+sF + +L++H+ +H XP_028053155.1 66 TCEQCGTSFQKPAHLRQHMLSH 87 6*******************99 PP
2	zf-C2H2	19.6	2.5e-06	93	117	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH+ H XP_028053155.1 93 FTCPldDCNSSYRRKDHLTRHLLQH 117 89*******************9887 PP
3	zf-C2H2	13	0.0003	122	147	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C+ +F + n+krH + H XP_028053155.1 122 FECPveNCNSRFAFQGNMKRHVKEfH 147 89********************9988 PP
4	zf-C2H2	18.2	6.9e-06	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F+ s L++H +H XP_028053155.1 163 YICQeiGCGKEFKYASKLRKHEASH 187 89*******************9998 PP
5	zf-C2H2	13.6	0.0002	255	278	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C +Fs++snL++H + H XP_028053155.1 255 CNfkGCQHTFSTRSNLHQHEKAvH 278 88889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEKGGREREV PIFRDIRRYY CKYCGICRSK KSLITSHVLS HHQDKIEDND GVDGNGEKKE 60 VKSNNTCEQC GTSFQKPAHL RQHMLSHSIE RPFTCPLDDC NSSYRRKDHL TRHLLQHQGK 120 LFECPVENCN SRFAFQGNMK RHVKEFHEEE SSSSNGDNGP KQYICQEIGC GKEFKYASKL 180 RKHEASHVEL VTVETFCSEP GCMKNFTNLQ CLKAHLQSCH RHITCEVCGT KQLKKNIKRH 240 LRTHEAGCSS ERINCNFKGC QHTFSTRSNL HQHEKAVHLE LRRFACSITG CGMRFTFKHV 300 RDKHEKSGCH VYTYGDFEES DEQFRSIPRG GQKRKCPTIE TLTRKRVCPP SESDSIMNQG 360 PDYLSWLLST EAEDDGQQ

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEKGGREREV PIFRDIRRYY CKYCGICRSK KSLITSHVLS HHQDKIEDND GVDGNGEKKE  60
VKSNNTCEQC GTSFQKPAHL RQHMLSHSIE RPFTCPLDDC NSSYRRKDHL TRHLLQHQGK  120
LFECPVENCN SRFAFQGNMK RHVKEFHEEE SSSSNGDNGP KQYICQEIGC GKEFKYASKL  180
RKHEASHVEL VTVETFCSEP GCMKNFTNLQ CLKAHLQSCH RHITCEVCGT KQLKKNIKRH  240
LRTHEAGCSS ERINCNFKGC QHTFSTRSNL HQHEKAVHLE LRRFACSITG CGMRFTFKHV  300
RDKHEKSGCH VYTYGDFEES DEQFRSIPRG GQKRKCPTIE TLTRKRVCPP SESDSIMNQG  360
PDYLSWLLST EAEDDGQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-140	C2H2 family protein