PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028053400.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 234aa    MW: 25590.4 Da    PI: 8.0958
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028053400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.53.1e-40181181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq  +l+ael
  XP_028053400.1  18 PCGACKFLRRKCMAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHVPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQKVNLQAEL 112
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_028053400.1 113 SYLQAH 118
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MTSNHSTTTT TTSGGGGPCG ACKFLRRKCM AGCIFAPYFD SEQGAAHFAA VHKVFGASNV  60
SKLLHHVPAH KRLDAVVTIC YEAQARLRDP VYGCVAHIFA LQQQKVNLQA ELSYLQAHLA  120
TLELPIPLPP LPPQPLLMPP TLSLEDLPST SSMPHANDLS LLFEPIVQPS WTMQHRQINP  180
RQFGDTRTPS DILSSIEDNN GSGDLQAVAQ ELIRRRRPPP VQCLEAKPLP PHSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-70LBD family protein