PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053739.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 594aa MW: 68109.1 Da PI: 6.5877

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.3e-10	320	362	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+++ ++ Lr l+Pk + Kl+Ka+i+ A+e++k+L XP_028053739.1 320 VAERRRRKKLDARLYALRALVPKiS------KLDKASIVGDAIEFVKEL 362 68*******************66......**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MNLMQDLLER LRPIVNLRSW DYCVLWKLGD DQRFLEWMYC CCAGSENIQN SGEELLFPVS 60 SVPPCRDLMF QHPRTKPCDL LAELPSSIPL HSGIYAQTLM SNQARWLNFS NNSDSNALEE 120 TVGTRVLIPV PVGLVDLFVA KLEPEDQQII DYITAQCSII LEQVMVHSNN MDPNFSVNVN 180 EIQSNPFLLD KNREKDHNNP FQPATSLENL NLPYDVSVDR IRLCNSPTNF LQPFKNDSFF 240 DGSNELFLVE KSINSFNSLG ENGFLEKNLI KQQDGTNKDS IKNETGRSES ISDCSDLNED 300 EDDAKYRRRT SKRPQSKNLV AERRRRKKLD ARLYALRALV PKISKLDKAS IVGDAIEFVK 360 ELKKQVKDLQ HELEDQSDDE CTNNNNNNNN NNHNNNKYGR SEILNQNGTN NVVGLKPDQH 420 KKAPPNEFHK RGAEATASKS GVAEPPKQNH ESNTCDKLRQ MEPHVEVAQL DGNEFFIKVF 480 CEHKHGGFLR LMEALNSLGL EITNVNVASF RTLVSNVFKV EKRDSEMVQA DHVRGFLLEI 540 TRNPSEMWRK LSNHNGNDNG MDYHHHHHDH HNPHNHLHSH QISSHHHHRN HLHN

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MNLMQDLLER LRPIVNLRSW DYCVLWKLGD DQRFLEWMYC CCAGSENIQN SGEELLFPVS  60
SVPPCRDLMF QHPRTKPCDL LAELPSSIPL HSGIYAQTLM SNQARWLNFS NNSDSNALEE  120
TVGTRVLIPV PVGLVDLFVA KLEPEDQQII DYITAQCSII LEQVMVHSNN MDPNFSVNVN  180
EIQSNPFLLD KNREKDHNNP FQPATSLENL NLPYDVSVDR IRLCNSPTNF LQPFKNDSFF  240
DGSNELFLVE KSINSFNSLG ENGFLEKNLI KQQDGTNKDS IKNETGRSES ISDCSDLNED  300
EDDAKYRRRT SKRPQSKNLV AERRRRKKLD ARLYALRALV PKISKLDKAS IVGDAIEFVK  360
ELKKQVKDLQ HELEDQSDDE CTNNNNNNNN NNHNNNKYGR SEILNQNGTN NVVGLKPDQH  420
KKAPPNEFHK RGAEATASKS GVAEPPKQNH ESNTCDKLRQ MEPHVEVAQL DGNEFFIKVF  480
CEHKHGGFLR LMEALNSLGL EITNVNVASF RTLVSNVFKV EKRDSEMVQA DHVRGFLLEI  540
TRNPSEMWRK LSNHNGNDNG MDYHHHHHDH HNPHNHLHSH QISSHHHHRN HLHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	328	RRRTSKRPQSKNLVAERRRRKK
2	322	329	ERRRRKKL
3	323	367	RRRRKKLDARLYALRALVPKISKLDKASIVGDAIEFVKELKKQVK
4	324	368	RRRRKKLDARLYALRALVPKISKLDKASIVGDAIEFVKELKKQVK
5	325	369	RRRRKKLDARLYALRALVPKISKLDKASIVGDAIEFVKELKKQVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-145	bHLH family protein