PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028055935.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 232aa    MW: 25268.4 Da    PI: 6.4949
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028055935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.49.2e-286107197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l++ +      ++q++++ +v+k+FG++ ++++l+++p+++r+++++sl++e + ++ +Pv+Gavg++++++++++q+
  XP_028055935.1   6 SCNGCRVLRKGCNDNCILRQSIqgietSQAQANATVFVAKFFGRAGLMSFLSSVPDSQRPALFQSLLFEVCGCTVNPVNGAVGLLWTGNWHVCQA 100
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_028055935.1 101 AVETVLR 107
                     *998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MCREMSCNGC RVLRKGCNDN CILRQSIQGI ETSQAQANAT VFVAKFFGRA GLMSFLSSVP  60
DSQRPALFQS LLFEVCGCTV NPVNGAVGLL WTGNWHVCQA AVETVLRGGV LRPIPEFSGE  120
TPADEFDDAS NNNTKSMDFF GSLDLHSASK VKDFNELTAR SQPIADLDLC LEQSLKTAGG  180
RVNRRPEKRR AETPSSSKSE ESETTTLESG GSAYNQTLQG GRNEGKLLRL FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-66LBD family protein