PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056214.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 217aa MW: 24115.6 Da PI: 8.4867

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96	3.9e-30	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlrr+C ++C+l+p++ p++q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_028056214.1 4 SCNGCRVLRRRCGESCILRPCLqwiesPQAQGHATLFVSKFFGRSDLMSFISAVPHNNRPALFQSLLFEACGRTVNPVNGAVGLLSTGNWHICQA 98 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l XP_028056214.1 99 AVQTVLS 105 9998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MMMSCNGCRV LRRRCGESCI LRPCLQWIES PQAQGHATLF VSKFFGRSDL MSFISAVPHN 60 NRPALFQSLL FEACGRTVNP VNGAVGLLST GNWHICQAAV QTVLSGGTLR PNLTGILNPE 120 TNESSKAFLA DALKLQNRYS GFDNDSSGTQ LQFSDLNISS GLNYYEQKKK QQQKAMAISF 180 NLEESSEMVM MSFGGNDDYG VKKLRREEEP KLLKLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	5e-67	LBD family protein