PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056282.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 392aa MW: 42740 Da PI: 7.758

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	1.9e-11	39	64	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_028056282.1 39 GEPDCSYYIRTGLCRFGATCRFNHPP 64 6899********************97 PP
2	zf-CCCH	36.5	8.1e-12	92	115	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H+p XP_028056282.1 92 TECAYYLRTGQCKFGSTCKFHHPP 115 68********************97 PP
3	zf-CCCH	38.1	2.6e-12	251	277	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_028056282.1 251 PGQPECQFYMKTGDCKFGAVCRFHHPR 277 5789*********************96 PP
4	zf-CCCH	40.3	5.1e-13	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_028056282.1 297 PGEPLCIFYSRYGICKFGPSCKFDHPM 323 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MEYDAGISMS QPYDEDTLWQ MNLRSSETME LGPYPVREGE PDCSYYIRTG LCRFGATCRF 60 NHPPNRKLAI ATARMKGEYP ERIGQPECQN ETECAYYLRT GQCKFGSTCK FHHPPPSNMM 120 VSLRGSPVYP SAHSPTTADQ QSYPGGIANW PLSRASFIPS PRWQGPSSYG PMILPQGVVS 180 VPGWNAYSGQ LSSMSSPESQ QQTAGNSIYG NSRQSEAANA GSQGTLSPYR SGSVPVGYYA 240 LQRENVFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL IPAPDCVLSP IGLPLRPGEP 300 LCIFYSRYGI CKFGPSCKFD HPMGVLTYNL AASSSSADAP VVRRLLASSS GSGVLALSSE 360 GLVEAGSSKP RRLSLSESRS MPSGDDKIDT EG

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MEYDAGISMS QPYDEDTLWQ MNLRSSETME LGPYPVREGE PDCSYYIRTG LCRFGATCRF  60
NHPPNRKLAI ATARMKGEYP ERIGQPECQN ETECAYYLRT GQCKFGSTCK FHHPPPSNMM  120
VSLRGSPVYP SAHSPTTADQ QSYPGGIANW PLSRASFIPS PRWQGPSSYG PMILPQGVVS  180
VPGWNAYSGQ LSSMSSPESQ QQTAGNSIYG NSRQSEAANA GSQGTLSPYR SGSVPVGYYA  240
LQRENVFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL IPAPDCVLSP IGLPLRPGEP  300
LCIFYSRYGI CKFGPSCKFD HPMGVLTYNL AASSSSADAP VVRRLLASSS GSGVLALSSE  360
GLVEAGSSKP RRLSLSESRS MPSGDDKIDT EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-142	C3H family protein