PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056424.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 361aa MW: 39978 Da PI: 5.6027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.4e-16	116	162	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_028056424.1 116 VHNLSEKRRRRRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 162 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MADMYNYKTT CSSSSFPSEP DDISLFLHQM LLRSSSSSSS SPMQTTPHRP IPTSLLSGFE 60 RPTTHPISAA ESSSGLNDPD EYDCESEEGF EALVEEGLAK AITPRNSSKR SRAAEVHNLS 120 EKRRRRRINE KMKALQNLIP NSNKTDKASM LDEAIEYLKQ LQLQVQMLTM RNGLSLYPMC 180 LPGVLQPAQL SDIKMSFYEG NGTLNMDMTG MLPVNQETPT NTLFNIPNQS TNPSELSAAN 240 LSIINSGTSF GMDSSIQGHL RPFQPHTSSK VKEICREDML LPCQHLNVDD HSQMNSLDFE 300 MGTKATVSIP LETQASDVKD NALEAFILRT ERPESLLLSN LGHNPVLAPP FESHARGKRS 360 T

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MADMYNYKTT CSSSSFPSEP DDISLFLHQM LLRSSSSSSS SPMQTTPHRP IPTSLLSGFE  60
RPTTHPISAA ESSSGLNDPD EYDCESEEGF EALVEEGLAK AITPRNSSKR SRAAEVHNLS  120
EKRRRRRINE KMKALQNLIP NSNKTDKASM LDEAIEYLKQ LQLQVQMLTM RNGLSLYPMC  180
LPGVLQPAQL SDIKMSFYEG NGTLNMDMTG MLPVNQETPT NTLFNIPNQS TNPSELSAAN  240
LSIINSGTSF GMDSSIQGHL RPFQPHTSSK VKEICREDML LPCQHLNVDD HSQMNSLDFE  300
MGTKATVSIP LETQASDVKD NALEAFILRT ERPESLLLSN LGHNPVLAPP FESHARGKRS  360
T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	KRRRRR
2	122	128	KRRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	4e-51	bHLH family protein