PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028057168.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 869aa    MW: 96607.3 Da    PI: 6.5141
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028057168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23168269199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_028057168.1 168 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 259
                     99*****************************7333.34459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_028057168.1 260 GELRVGVRRA 269
                     99*****996 PP
2Auxin_resp113.22.4e-37294376183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha +t+++F+v+Y+Pr+s++eF+v++e++ +++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++++d  rW++SkWrsLk
  XP_028057168.1 294 AWHAYTTGTIFTVYYKPRTSPAEFIVPFEQYTESIKSNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEEADAKRWQDSKWRSLK 376
                     79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    
MASSEVSFKG NNARGESFSS GYCDQNDGAA AKACSTVSGG GKGNSGGFSF FSGEFAVDPE  60
TALYTELWRA CAGPLVTVPR EGERVFYFPQ GHIEQVEAST NQVADQEMPV YNLPSKILCR  120
VINVQLKAEP DTDEVFAQVT LLPLKEDENE AGKEPVPPAP TRFRVHSFCK TLTASDTSTH  180
GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGNEWRF RHIFRGQPRR HLLQSGWSVF  240
VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNVPSSV ISSHSMHLGV LATAWHAYTT  300
GTIFTVYYKP RTSPAEFIVP FEQYTESIKS NYSIGMRFKM RFEGEEAPEQ RFTGTIVGIE  360
EADAKRWQDS KWRSLKVRWD ENSTIPRPER VSPWKIEPAL SPPALNPLPL PRPKRPRSNM  420
VPSSPDSSVL TREGSSKVTI DPTPASGFSR VLQGQELSTL RGTFAESNES DSTEKPGLWP  480
PSLDDEKIDM VCASQRYGSD RWLPSPRPES TFTDLLSGFG THTNSSHEFC TPSVDQSTGA  540
VKSMKLNLPD QEGRFSFLPS NWSAMPSGLS LNLFDSSMKA HVHGSDVPYH TQDVRCGGFD  600
EYSLLPGQKA EQQQRNWLMP PPLSSSYFQM PAQSGELISR PVLVQHEAVK PKDGNCKLFG  660
IPLNPVTVEP TVSHKNSALP AGHMNLVSHS QQSRSFESDQ RSEQIKGINM ADTSHPSSEQ  720
EKPSQTCQPH IRDRQRKVQG GSTRSCTKVH KQGIALGRSV DLTKFNDYEE LIAELDQIFD  780
FNGVLKAQNK NWLIVYTDDE GDMMLVGDDP WPEFCGMVRK IFIYTREEVQ RMNPGTLNSK  840
NEECSLGGEC MDEKEVKNLS SPSVSSPKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein