PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028057408.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25326.5 Da    PI: 8.7751
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028057408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1964118256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  XP_028057408.1  64 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLQLKARQVEVWFQNRRARSK 118
                     78889************************************************98 PP
2HD-ZIP_I/II115.14.2e-3764152189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+L+r++ +l+e+n+rL+keveeLr+
  XP_028057408.1  64 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLQLKARQVEVWFQNRRARSKLKQTEMECEYLRRWFGSLTEQNRRLQKEVEELRA 152
                     69*************************************************************************************94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MPGFASSHSL PSSEGVGGGG GMMRDLDINQ LPPSGRGEEE WTTASMELDE DDTNTGGGDG  60
GPPRKKLRLT KEQSRLLEES FRQNHTLNPK QKEALAMQLQ LKARQVEVWF QNRRARSKLK  120
QTEMECEYLR RWFGSLTEQN RRLQKEVEEL RAMKVGPPTV ISPHSCEPLP ASTLTMCPRC  180
ERVSSSSSAA TTTQDKGPTT RATNNPTTLS LSSSKVQPII HPRHPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-67HD-ZIP family protein