PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058115.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 695aa MW: 77153.6 Da PI: 9.847

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4.2e-07	596	645	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_028058115.1 596 RRPFSVYEVEALVQAVEKLGTGRWREVKLRAFdnaKHRTYVDLKDKWKTL 645 567888899***************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MVLQKRLDYG FNGYQVPPTP RATRSARRRV PFRKNVDDNQ MCAFDLLATV AGKLLLEGEN 60 SPSSGNALTG KELCTIVKDS FKKEQKDEDN PSKAEPCDRV SCDRSFSFLE LASHAPALRH 120 SLKEFSHAHI DDCWGLASVI TTSDCSEKVG SSEKSKSKIQ LGSSASKLEV ASSGYQESCD 180 FTVGNENKKQ IKIESPKTGN AINVTKADIC SSDDLAVRDR KPPILVSVNN RVKLPSCIDQ 240 IPSSSFPACR DDVKLVIRDD DENSSGCSQP STTTKTFRSP LCIGNRRIRK FFSSKYWKVT 300 PKLKDEEHFN ADSEIKPVYH NRKICYKRRR SQRDYPFKKR RLYDRSSVSN FEGISSEGIS 360 SSPRKGFSCD ASGSSATPRG ASGIAACVAG QRTSFQSRDS HVKLRIKSFK VPELVIEIPE 420 SATVGSLKRT VMDAVTAILG GGLRVGVLLQ GKKIRDDNKT LLQTGISHNN KLDALGFSLE 480 PNPLQAPQSL CHEDRPFLLA CDTPQPLIRY PPAPSVVHNV VQQRTADALP DPPLSSLGNF 540 IESDHDSAPS PPDMSIAKSP THSRALVAVP AMNVEALAVV PMRKSKRSDA VQRRIRRPFS 600 VYEVEALVQA VEKLGTGRWR EVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP 660 VPQELLDRVL TAHAYWSQQE AKQQLKQQNS ETCRL

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MVLQKRLDYG FNGYQVPPTP RATRSARRRV PFRKNVDDNQ MCAFDLLATV AGKLLLEGEN  60
SPSSGNALTG KELCTIVKDS FKKEQKDEDN PSKAEPCDRV SCDRSFSFLE LASHAPALRH  120
SLKEFSHAHI DDCWGLASVI TTSDCSEKVG SSEKSKSKIQ LGSSASKLEV ASSGYQESCD  180
FTVGNENKKQ IKIESPKTGN AINVTKADIC SSDDLAVRDR KPPILVSVNN RVKLPSCIDQ  240
IPSSSFPACR DDVKLVIRDD DENSSGCSQP STTTKTFRSP LCIGNRRIRK FFSSKYWKVT  300
PKLKDEEHFN ADSEIKPVYH NRKICYKRRR SQRDYPFKKR RLYDRSSVSN FEGISSEGIS  360
SSPRKGFSCD ASGSSATPRG ASGIAACVAG QRTSFQSRDS HVKLRIKSFK VPELVIEIPE  420
SATVGSLKRT VMDAVTAILG GGLRVGVLLQ GKKIRDDNKT LLQTGISHNN KLDALGFSLE  480
PNPLQAPQSL CHEDRPFLLA CDTPQPLIRY PPAPSVVHNV VQQRTADALP DPPLSSLGNF  540
IESDHDSAPS PPDMSIAKSP THSRALVAVP AMNVEALAVV PMRKSKRSDA VQRRIRRPFS  600
VYEVEALVQA VEKLGTGRWR EVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP  660
VPQELLDRVL TAHAYWSQQE AKQQLKQQNS ETCRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	341	KRRRSQRDYPFKKRR
2	327	342	KRRRSQRDYPFKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-137	MYB_related family protein