PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028058456.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 237aa    MW: 27818.1 Da    PI: 9.1925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028058456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.35.3e-20858151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ie+ ++ qvtfskRr  ++KKA+E+Sv Cd+++a i fs++g++  ++s
  XP_028058456.1  8 KKIEDITKCQVTFSKRRSSLIKKAHEISVCCDVDIAFITFSPSGRVSKFCS 58
                    689********************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MVRKVDMKKI EDITKCQVTF SKRRSSLIKK AHEISVCCDV DIAFITFSPS GRVSKFCSQR  60
RIEDLIHRYI NLPVDKRFTH IKNVQEKQEK IHQLDRIKGD TSKLQYLEKQ VENLELQIKK  120
RTLELQILEA NIRDYELLPE QEPSLHQLMW CERNLKQSLE KVVARKNALS GSYSSLQSQP  180
NTQVEMENQG GMPLSCYIDG RDLSWVPKSP PSRQLLMQLD PWISPYRFTC YQQLNGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.23e-31MIKC_MADS family protein