PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028058457.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 220aa    MW: 26054.3 Da    PI: 9.2129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028058457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.7e-20858151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ie+ ++ qvtfskRr  ++KKA+E+Sv Cd+++a i fs++g++  ++s
  XP_028058457.1  8 KKIEDITKCQVTFSKRRSSLIKKAHEISVCCDVDIAFITFSPSGRVSKFCS 58
                    689********************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MVRKVDMKKI EDITKCQVTF SKRRSSLIKK AHEISVCCDV DIAFITFSPS GRVSKFCSQR  60
RIEDLIHRYI NLPVDKRFTH IKNVQEKQEK IHQLDRIKGD TSKLQYLEKQ VENLELQIKK  120
RTLELQILEA NIRDYELLPE QEPSLHQLMW CERNLKQSLE KVVARKVEME NQGGMPLSCY  180
IDGRDLSWVP KSPPSRQLLM QLDPWISPYR FTCYQQLNGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.28e-31MIKC_MADS family protein