PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028058500.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 213aa    MW: 23147.1 Da    PI: 4.8839
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028058500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.91.5e-42451441100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la
  XP_028058500.1  45 PCAACKILRRRCAEKCVLAPYFPPTDPLKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQAQLA 139
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028058500.1 140 KAQAE 144
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MESSGSDTTT TTTTISSSSP QYSVSPTSSS SPPPPPPPSQ VVVSPCAACK ILRRRCAEKC  60
VLAPYFPPTD PLKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC  120
AGAICQLQKQ VNELQAQLAK AQAELVNMQC QQANLVALIY MEMAQSPQAS TLSSQQSFDN  180
FMISSPQSFQ NSNPSFFIDE NNNLGSFCET LWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-60LBD family protein