PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058918.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 444aa MW: 49066.1 Da PI: 7.6116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.7e-12	372	417	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq XP_028058918.1 372 SIAERMRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 417 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MYGVGGSQAI SSDSNLLFSS TLKHSDGEFD KNREFVNSDL YHHHQNQNQN HQQNQQSSGL 60 MRYRSAPSSF LASLVDGGGA EDFVNPHQSP VPESESMFLR FMSSNGAVDS TPQDLQYPTV 120 IIKNEVPEHV NQYSTTSTQM IYQTSPDHHH QNSDSLCSQT NLDGLYKVGN GGTVMENQVQ 180 GKISSANCSN LIRQSSSPAE LFSNLSVENG FAVMRDVGNF RVSNGTNGKA SPTKRLNYNI 240 NFSSGPSSCS RFMPQIAENG NESSSSPENG QLGNGNSSNG FYVPSFQNVP WNESGFTGLK 300 RKRDGEENFS GFNALESQDG DSRIYTTGLT HHLSLPKTSA EMAAVEKFLQ FQQDSVPCKI 360 RAKRGCATHP RSIAERMRRT RISERMRKLQ ELFPNMDKQT NTADMLDLAV EYIKDLQKQV 420 KTLTGTRAKC TCSSKQKQLS NSTV

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MYGVGGSQAI SSDSNLLFSS TLKHSDGEFD KNREFVNSDL YHHHQNQNQN HQQNQQSSGL  60
MRYRSAPSSF LASLVDGGGA EDFVNPHQSP VPESESMFLR FMSSNGAVDS TPQDLQYPTV  120
IIKNEVPEHV NQYSTTSTQM IYQTSPDHHH QNSDSLCSQT NLDGLYKVGN GGTVMENQVQ  180
GKISSANCSN LIRQSSSPAE LFSNLSVENG FAVMRDVGNF RVSNGTNGKA SPTKRLNYNI  240
NFSSGPSSCS RFMPQIAENG NESSSSPENG QLGNGNSSNG FYVPSFQNVP WNESGFTGLK  300
RKRDGEENFS GFNALESQDG DSRIYTTGLT HHLSLPKTSA EMAAVEKFLQ FQQDSVPCKI  360
RAKRGCATHP RSIAERMRRT RISERMRKLQ ELFPNMDKQT NTADMLDLAV EYIKDLQKQV  420
KTLTGTRAKC TCSSKQKQLS NSTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-59	bHLH family protein