PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058977.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 789aa MW: 89543.1 Da PI: 6.593

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.7	1.2e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel XP_028058977.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNVHNHELL 152 6*************999887455667****************9***************98887676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence
MSELTNVVKE TSENGTDLSP DDIGTIEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRI TGFSNVHNHE LLKSNEVQLL PAYCTMSADD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDPIDLLK MCKDQKDKDP 240 NFKYNFKIDA NNRLEHIAWS YSSSVQSYEA FGDAVVFDTT HRLDAYDMLV GIWIGVDNHG 300 MHCFFGCVLL RDENMQSFSW ALKLSVVMLQ QLSLGPIKEM MPLMSFISES LGSQMTFVGF 360 MNGKAPETIL TDQNVWLKEA LAAEMPRTKH AFCIWHIISK FSDWFSVLLG SQYDKWRAEF 420 HRLYNLHSVE DFEVGWREMV DTNGLHGNKH IVSLYALRTF WALPFLRCYF FAGMTSSFQS 480 DSINAYIQRF LSAQSALDNF VEQLATVVDV KDAGVKHKMQ RKVQKLSLKT GSPIESHAAT 540 VLTPYAFCKL QEELVLAPQY ASLMIDESYF VVRHHTEIDG GCKVIWVPHD EFISCSCHQF 600 EFSGILCRHV LRVLSTNNCF HIPDQYLPIR WRDVASSMTK SIQGPTSGDH VVKVQFLHSV 660 VSTLLTESTE TEERLDVACD QIALVLSRIK EFPGPSHGAD DISYNSPSDS LILPEVEDSD 720 GIVQSFTAGN PHESLTLGKL KERRSRDPAD MYRKRRRCSV PCCGQFGHDA ADCPMMGGDD 780 LNADGLGFL

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence

MSELTNVVKE TSENGTDLSP DDIGTIEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRI TGFSNVHNHE LLKSNEVQLL PAYCTMSADD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDPIDLLK MCKDQKDKDP  240
NFKYNFKIDA NNRLEHIAWS YSSSVQSYEA FGDAVVFDTT HRLDAYDMLV GIWIGVDNHG  300
MHCFFGCVLL RDENMQSFSW ALKLSVVMLQ QLSLGPIKEM MPLMSFISES LGSQMTFVGF  360
MNGKAPETIL TDQNVWLKEA LAAEMPRTKH AFCIWHIISK FSDWFSVLLG SQYDKWRAEF  420
HRLYNLHSVE DFEVGWREMV DTNGLHGNKH IVSLYALRTF WALPFLRCYF FAGMTSSFQS  480
DSINAYIQRF LSAQSALDNF VEQLATVVDV KDAGVKHKMQ RKVQKLSLKT GSPIESHAAT  540
VLTPYAFCKL QEELVLAPQY ASLMIDESYF VVRHHTEIDG GCKVIWVPHD EFISCSCHQF  600
EFSGILCRHV LRVLSTNNCF HIPDQYLPIR WRDVASSMTK SIQGPTSGDH VVKVQFLHSV  660
VSTLLTESTE TEERLDVACD QIALVLSRIK EFPGPSHGAD DISYNSPSDS LILPEVEDSD  720
GIVQSFTAGN PHESLTLGKL KERRSRDPAD MYRKRRRCSV PCCGQFGHDA ADCPMMGGDD  780
LNADGLGFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	753	757	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein