PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028059192.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 28103 Da PI: 9.3231

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028059192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.9	3.6e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+S+LCdae+a+iifs++gkl+eys+ XP_028059192.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISILCDAEIALIIFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	102.2	6.8e-34	82	174	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++ + s++ e akLk+++e Lq++qRhl+GedL++L+lkeLq+Le+qL+++lk+iR++Kn+l++e+i+elqkk k+lqe+n+ L+k+++e XP_028059192.1 82 ATDTESQGSWTLENAKLKARLEVLQKNQRHLMGEDLDTLNLKELQNLEHQLDSALKHIRTRKNQLMYESISELQKKDKALQEQNNLLTKQIKE 174 456677889*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISILCD AEIALIIFST KGKLFEYSTD 60 SCMERILERY ERYSHAERQL IATDTESQGS WTLENAKLKA RLEVLQKNQR HLMGEDLDTL 120 NLKELQNLEH QLDSALKHIR TRKNQLMYES ISELQKKDKA LQEQNNLLTK QIKEKEKKEK 180 EQQAQLEQHQ NHDLNSSSVV ISQSLHSLNI GGAYQAAVGD VEGAPHQIQN NAVMPPWMIS 240 HING

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	1e-94	MIKC_MADS family protein