PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028059193.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26478.2 Da    PI: 9.3402
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028059193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF953.3e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+S+LCdae+a+iifs++gkl+eys+
  XP_028059193.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISILCDAEIALIIFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box88.31.5e-2982173899
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++++ + s++ e akLk+++e Lq++qRhl+GedL++L+lkeLq+Le+qL+++lk+iR++Kn+l++e+i+elqkk ke ++++k+ +++le
  XP_028059193.1  82 ATDTESQGSWTLENAKLKARLEVLQKNQRHLMGEDLDTLNLKELQNLEHQLDSALKHIRTRKNQLMYESISELQKKIKEKEKKEKEQQAQLE 173
                     456677889*******************************************************************9999998888777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISILCD AEIALIIFST KGKLFEYSTD  60
SCMERILERY ERYSHAERQL IATDTESQGS WTLENAKLKA RLEVLQKNQR HLMGEDLDTL  120
NLKELQNLEH QLDSALKHIR TRKNQLMYES ISELQKKIKE KEKKEKEQQA QLEQHQNHDL  180
NSSSVVISQS LHSLNIGGAY QAAVGDVEGA PHQIQNNAVM PPWMISHING
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-83MIKC_MADS family protein