PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028059218.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 226aa MW: 25992.8 Da PI: 9.2713

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028059218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.7	5.5e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrngilKKA+ELSvLCdaeva+iifs++gklye++s XP_028059218.1 9 KRIENKINRQVTFAKRRNGILKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	98.2	1.2e-32	70	155	15	100
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++e+ +Lk ++e Lq++qR+llGedL++L+ keL++Le+qLe+slk+iRs+K++++l+q+ +lqkke+ l e nkaLr+klee XP_028059218.1 70 QNGYHEYLRLKTRVEILQQSQRNLLGEDLGPLTTKELEHLEHQLENSLKQIRSTKTQFMLDQLADLQKKEQVLAESNKALRMKLEE 155 78899******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGILK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SRYPLHVLKQ NGYHEYLRLK TRVEILQQSQ RNLLGEDLGP LTTKELEHLE HQLENSLKQI 120 RSTKTQFMLD QLADLQKKEQ VLAESNKALR MKLEESTMEP LQLSWEAGEQ SIPYNNQIPA 180 RSEGFYQPLR LNSSLQIGYN PVGPDELHVA APTAQNVNGF IPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	4e-90	MIKC_MADS family protein