PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028059634.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 168aa MW: 18638.5 Da PI: 7.8289

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028059634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.7	5.6e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA ar+rdPvyG+vgvi++lq+q++qlk +la XP_028059634.1 6 PCASCKMLRRRCAKDCIFAPYFPSHDPHKFAIVHKIFGASNVSKMLQEIPVHQRADAVSSLVYEASARTRDPVYGCVGVISHLQNQVAQLKMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_028059634.1 101 VAQAE 105 99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MAGNSPCASC KMLRRRCAKD CIFAPYFPSH DPHKFAIVHK IFGASNVSKM LQEIPVHQRA 60 DAVSSLVYEA SARTRDPVYG CVGVISHLQN QVAQLKMQLA VAQAEMLCIH MQHEPAIPAP 120 ESFDRVDKSF LLQNNLPQCL NFVSSTSNVI QDSLKSESLL GHHDMVSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-71	LBD family protein