PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028060149.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family NF-YC
Protein Properties Length: 216aa    MW: 24366.3 Da    PI: 4.4627
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028060149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.71.7e-101131991399
           NF-YC  13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     +t    h +P+ ri +i+k+++   +i+ e+  l+ ka e f+  +   ++  a   +++ ++   ++++v++   fdfl d vp +
  XP_028060149.1 113 ETAASSHCFPIHRISRIIKSEDPDIRIAQESVFLINKASEKFLELFCKEAYGCAFLDRKKHVEYKHMSSVVSKRRRFDFLSDFVPVK 199
                     45566899***********86555579***************7666677888888889999***********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MEDKSQIQSK NKNTNENKKT NSNNGTESDD EPDLLHVVVP NSSSDSQNDG EDQDEDEDED  60
GVAQVEHSYE DDDNGDDEEA TSKEITNQPR NNAKNGDDEG EKEDSTKIKS RNETAASSHC  120
FPIHRISRII KSEDPDIRIA QESVFLINKA SEKFLELFCK EAYGCAFLDR KKHVEYKHMS  180
SVVSKRRRFD FLSDFVPVKA KAKAEDTLSE LSSAKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170188RKKHVEYKHMSSVVSKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.15e-25NF-YC family protein