PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028060205.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 557aa MW: 60095.5 Da PI: 5.8341

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028060205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	372	420	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + s Ka +L + ++Y++sLq XP_028060205.1 372 NSHSLAERVRREKISERMKVLQDIVPGC----SMVTGKAVMLDEIINYVQSLQ 420 58***********************9....78899*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MDMGGKDNFE QDKRNEDHLM SYHSANAASD WRFGVSNLSI PTSNPMEVCK GGIMVSPSCS 60 SAPIMEAFCP IVWDHPTNAQ NLGFCDINLQ NSASTSNTLG LRKGPLGPLS IEKTIDMVWT 120 PPNSIVKGGI CLPSAPGMLP QSLSQFPANS GFIERAARFS CFSGGNFSEM MNPFGISESM 180 NPYTSGAATM QRRQQEMFVG NGLKSVSGGQ SQKNEVNMIA EASKAVSFSV EQGAIEGSPL 240 KNERKSENFV RSQDEAKQDV GVSGKESDDQ AEVSGGGGGQ EDPSREPSAK GLGLKKRKRS 300 SQDNELDEVK EASQPPGETT KDSIEIQQKG NQTRTSMTIK PSGKHGKHGS QASDSPKEEY 360 IHVRARRGQA TNSHSLAERV RREKISERMK VLQDIVPGCS MVTGKAVMLD EIINYVQSLQ 420 QQVEFLSMKL ATVNPCLDFN LEGILTKDML QSRAGPSSTL GYSLDLTMPF PSLHPPQPGL 480 IQAGLPGMPN TSGALQRSIN THLTAISGGC KEPTQVANMW GEDELHNVVQ MGFNSSAPLD 540 SQDLNGSLPL DHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MDMGGKDNFE QDKRNEDHLM SYHSANAASD WRFGVSNLSI PTSNPMEVCK GGIMVSPSCS  60
SAPIMEAFCP IVWDHPTNAQ NLGFCDINLQ NSASTSNTLG LRKGPLGPLS IEKTIDMVWT  120
PPNSIVKGGI CLPSAPGMLP QSLSQFPANS GFIERAARFS CFSGGNFSEM MNPFGISESM  180
NPYTSGAATM QRRQQEMFVG NGLKSVSGGQ SQKNEVNMIA EASKAVSFSV EQGAIEGSPL  240
KNERKSENFV RSQDEAKQDV GVSGKESDDQ AEVSGGGGGQ EDPSREPSAK GLGLKKRKRS  300
SQDNELDEVK EASQPPGETT KDSIEIQQKG NQTRTSMTIK PSGKHGKHGS QASDSPKEEY  360
IHVRARRGQA TNSHSLAERV RREKISERMK VLQDIVPGCS MVTGKAVMLD EIINYVQSLQ  420
QQVEFLSMKL ATVNPCLDFN LEGILTKDML QSRAGPSSTL GYSLDLTMPF PSLHPPQPGL  480
IQAGLPGMPN TSGALQRSIN THLTAISGGC KEPTQVANMW GEDELHNVVQ MGFNSSAPLD  540
SQDLNGSLPL DHMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	300	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-117	bHLH family protein