PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028060317.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 162aa MW: 18622.9 Da PI: 9.8707

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028060317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.6	1.4e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+av+ifs +gklye s XP_028060317.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIAVLIFSANGKLYELS 58 79*********************************************977 PP
2	K-box	49.2	2.3e-17	80	158	7	85
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + ee++ +++e++ Lk+eie L++ +R + G ++e ++l eL+ Le++Le + +iRs K++++ ++i+ l+ k k XP_028060317.1 80 DHDEEKQVMDSKEEINMLKNEIEFLKKGLRFMSGGGVEAMTLDELHMLEKHLEIWIYHIRSAKMDIMSQEIQLLKTKIK 158 34678888899****************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIAVLIFSA NGKLYELSTK 60 GTMQGLVGRY MKSTGDTQAD HDEEKQVMDS KEEINMLKNE IEFLKKGLRF MSGGGVEAMT 120 LDELHMLEKH LEIWIYHIRS AKMDIMSQEI QLLKTKIKIP RQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	4e-64	MIKC_MADS family protein