PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028060940.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29837.2 Da    PI: 4.7679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028060940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.7e-2164117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  XP_028060940.1  64 KKRRLTPEQVNMLEKSFEAENKLEPEQKTQLAKKLGLQPRQVAVWFQNRRARWK 117
                     5668*************************************************9 PP
2HD-ZIP_I/II131.82.7e-4263154192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqv++LE+sFe+e+kLepe+K++la++LglqprqvavWFqnrRAR+ktk lE+d+++Lk++y++l ++ +++ ke+++L++e+ 
  XP_028060940.1  63 EKKRRLTPEQVNMLEKSFEAENKLEPEQKTQLAKKLGLQPRQVAVWFQNRRARWKTKLLERDFDHLKSSYESLLSDVDSICKENDKLKAEIV 154
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDSSRVFFDP SYHTNMLFVG NGDPVFRGGR SVMNMEETLK RRPFFSSSEE LYDDDYYDEQ  60
LSEKKRRLTP EQVNMLEKSF EAENKLEPEQ KTQLAKKLGL QPRQVAVWFQ NRRARWKTKL  120
LERDFDHLKS SYESLLSDVD SICKENDKLK AEIVSLTEKL QTKEVAAGGA PKSEPLPADV  180
VPHISILQLN VKVEDRLSSG SGGSAVVEEE DGPQLVDSGD SYLPKDDIDR RNYFSPVFAA  240
AEQQQHHPHD DGEPLGWWAW S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-85HD-ZIP family protein