PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028061091.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 301aa    MW: 34432.4 Da    PI: 6.5815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028061091.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-142269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l + + ++G g+W++++   g+ R +k+c++rw +yl
   XP_028061091.1 22 KGLWSPDEDQRLRNHILEHGHGCWSSVPINAGLQRNGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding46.58.8e-1575120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T+ E++ ++ ++++lG++ W+ Ia+++  gRt++++k++w++yl
   XP_028061091.1  75 RGMFTASEEQTILTLHAMLGNK-WSQIAQHLY-GRTDNEIKNYWHSYL 120
                      789*******************.********9.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGCDKSTEKP KPKQKQKQKH KKGLWSPDED QRLRNHILEH GHGCWSSVPI NAGLQRNGKS  60
CRLRWINYLR PGLKRGMFTA SEEQTILTLH AMLGNKWSQI AQHLYGRTDN EIKNYWHSYL  120
KKKVAKMEQT EPQNNTKLMS PNTESSLSSH KSTPRNPSFE SFEHMEGSST NTNQSIPQIF  180
NFPREPACFQ NNLPKLLFAE WLSLDQFQGQ EFGSSGEPAI SNKDAALDHN PNFQDSFLNG  240
LLANEGSFGC EFRQELSNGS ADEMFQHPQF KSEDWFLESE LVDLITEDDL NMNNGCVYEG  300
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-58MYB family protein