PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028061355.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26382.9 Da    PI: 9.1619
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028061355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++ey+s
  XP_028061355.1  9 KRIENPTNRQVTYSKRRNGIFKKAQELAVLCDAKVSLIMFSNTGKFHEYIS 59
                    79***********************************************86 PP
2K-box87.13.5e-2971166196
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g +l+++++e++q++l+kLk+ +++L+re+ h++Ge+L++Ls++eL  Leq+++ sl+ +R++K+++l++q+e+ +kk ++l+e++ +L 
  XP_028061355.1  71 YQKALGIDLWSTHYERMQEHLKKLKEINNKLRREIGHRIGEELNDLSIEELGGLEQKMDASLTIVRERKYHVLKTQTETYRKKVRNLEERHGNLL 165
                     78899999***********************************************************************************9997 PP

           K-box  96 k 96 
                      
  XP_028061355.1 166 L 166
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGRGKIEIKR IENPTNRQVT YSKRRNGIFK KAQELAVLCD AKVSLIMFSN TGKFHEYISP  60
SITTKKIYDE YQKALGIDLW STHYERMQEH LKKLKEINNK LRREIGHRIG EELNDLSIEE  120
LGGLEQKMDA SLTIVRERKY HVLKTQTETY RKKVRNLEER HGNLLLDYEA KCEDPQYGLV  180
DNDGDYDSAA ALSNGVSNLY AFRLQPSHPN LHHGGGGGVP GGFGSHDLRL A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-78MIKC_MADS family protein