PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028061621.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 237aa MW: 27307.1 Da PI: 7.8303

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028061621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l + + G +W+++++ g+ R++k+c++rw +yl XP_028061621.1 14 RGPWSIEEDHKLMNFILNNGIQCWRLVPKLAGLFRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.1	3e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++ +++++ +G++ W++Ia++++ gRt++++k++w++ XP_028061621.1 67 RGALTAAEEDMIIQLHSHYGNR-WSKIASHFP-GRTDNEIKNHWNT 110 7889****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRQPCCDKI GLRRGPWSIE EDHKLMNFIL NNGIQCWRLV PKLAGLFRCG KSCRLRWINY 60 LRPDLKRGAL TAAEEDMIIQ LHSHYGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG 120 LDPTTHKPIE QPEMFTTKEL DCGVPSSFEQ HQMFTTKDKV ILQSNSFWNQ ANNNLELDLH 180 DSLCSKGTSM AISATQPSNA SASVSEPVHE DFLQQWIDNP NSMLSWDGFN NLEEIFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	2e-84	MYB family protein