PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028061644.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27076.9 Da    PI: 6.9152
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028061644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.22.4e-192063144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    k+ie+ snrqvtfskRr+g++KKA+ L++L +ae+a+++ s+  
  XP_028061644.1 20 KKIESVSNRQVTFSKRRAGLFKKASQLCILSGAEIAIVVKSPGK 63
                    68*************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MVTMNPTKKT TQGRQKIEIK KIESVSNRQV TFSKRRAGLF KKASQLCILS GAEIAIVVKS  60
PGKRTFAFGQ PSVDAVIDRY LTGTSAAAEQ NNRPSVLDFN EKYAQVSKEL EADKRRRAVI  120
EETKKASNDG GFWWDEAVEE LGLEELEQYV VALEELKKNV SMKADELMIM KANSSMMFGM  180
NESANHGGLG LMSDCATYTV PHGFDCANSS MMFGMNESAN HGGLGLMCDC ATSMIPHGFD  240
FGRGQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-40M-type_MADS family protein