PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028061661.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 243aa    MW: 26688.4 Da    PI: 6.6714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028061661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.2e-201760144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    k+ie+ s+rqvtfskRr+g++KKA+EL++L +ae+a+++ s+  
  XP_028061661.1 17 KKIESVSKRQVTFSKRRAGLFKKASELCILSGAEIAIVVKSPGK 60
                    68*************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MNTTKKTTQG RQKIEIKKIE SVSKRQVTFS KRRAGLFKKA SELCILSGAE IAIVVKSPGK  60
RTFAFGHPSV DAVIDRYLTG TSATAEQNNC PSVLDFNEKY AQVSKELEAE KRRSAVIEET  120
KKVANDGGFW WDEAVDDLGL EELEQYVAAL EELKKNVSMK ADELMIMKAN SSMMFGMNES  180
ANHGGLGLMS DCATSMVPHG FDCANSSMMF GMNESANHGG LRLMSDCATS MIPHGFDFGR  240
GQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-41M-type_MADS family protein