PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062029.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 450aa MW: 49453.1 Da PI: 8.3187

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	158	203	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_028062029.1 158 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 203 899***************************.*********996 PP
2	Myb_DNA-binding	55.3	1.5e-17	210	253	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ XP_028062029.1 210 RKAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 253 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MANKCVLYAP KNNTNGMSCY TSTKTTVSSS STSSSSSSSS SSSSSSSSPF GAFMGMVLAD 60 MGSLSITPPN LGSASTSVAS SSQESFLCKS SEMENEKSTW GFPFMGEGNG CDCSDGFGEN 120 NEAIDLNASF NEEKKANIYA GSGSAKETDF GQSKLCARGH WRPAEDAKLK ELVALYGPQN 180 WNLIAEKLEG RSGKSCRLRW FNQLDPRINR KAFSEEEEER LMAAHRLYGN KWAMIARLFP 240 GRTDNAVKNH WHVIMARKYR EQSSAYRRRK MAQSVYKRME EDPSLVYTAT RTETPPPPPP 300 PPLPYCFNLS NGGLHHSSPF PFPKFNGGGG EAISSSNVPI HHSGFCAQQT PDLLPGHKSQ 360 KRVIFNRPWD RSGDEPNISY LNHPHQHQAP LVTAMQQSLY HHYPPSFYSD SPKPQASVTE 420 PSSSVTEDRH ASQFKAIAPT FIDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MANKCVLYAP KNNTNGMSCY TSTKTTVSSS STSSSSSSSS SSSSSSSSPF GAFMGMVLAD  60
MGSLSITPPN LGSASTSVAS SSQESFLCKS SEMENEKSTW GFPFMGEGNG CDCSDGFGEN  120
NEAIDLNASF NEEKKANIYA GSGSAKETDF GQSKLCARGH WRPAEDAKLK ELVALYGPQN  180
WNLIAEKLEG RSGKSCRLRW FNQLDPRINR KAFSEEEEER LMAAHRLYGN KWAMIARLFP  240
GRTDNAVKNH WHVIMARKYR EQSSAYRRRK MAQSVYKRME EDPSLVYTAT RTETPPPPPP  300
PPLPYCFNLS NGGLHHSSPF PFPKFNGGGG EAISSSNVPI HHSGFCAQQT PDLLPGHKSQ  360
KRVIFNRPWD RSGDEPNISY LNHPHQHQAP LVTAMQQSLY HHYPPSFYSD SPKPQASVTE  420
PSSSVTEDRH ASQFKAIAPT FIDFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-77	MYB family protein