PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028062146.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28225.9 Da    PI: 9.7346
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028062146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-312676151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+
  XP_028062146.1 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSN 76
                    79***********************************************95 PP
2K-box115.64.6e-38941904100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++e +a+ +qqe+akL+ +i+nLq+++Rh+lGe+L+s+s+++L++Le++Le+++++iRskKnell+++ie +qk+e +l++ n++Lr+k+
  XP_028062146.1  94 SNTGSVSELNAQFYQQEAAKLRGQISNLQNSHRHMLGESLSSMSIRDLKNLESRLERGISRIRSKKNELLFAEIELMQKREIDLHNSNQYLRAKI 188
                     4445599***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_028062146.1 189 AE 190
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MSYLNQSMEV LDSPQRKIGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV  60
ALIVFSTRGR LYEYSNNSVK GTIERYKKAC SDSSNTGSVS ELNAQFYQQE AAKLRGQISN  120
LQNSHRHMLG ESLSSMSIRD LKNLESRLER GISRIRSKKN ELLFAEIELM QKREIDLHNS  180
NQYLRAKIAE NERAQQQMNL MPGGGSEYEL MPPPQSFDTR NYFQVNGLQP NDHYSRHDQT  240
ALQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-120MIKC_MADS family protein