PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062219.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 259aa MW: 29710.7 Da PI: 9.4992

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.7e-31	32	81	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_028062219.1 32 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 81 79***********************************************8 PP
2	K-box	109.6	3.4e-36	103	196	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ea+++ +qqe++kL+++i+ +q+++Rh+lGe L+sL++keL++Le++Lek+++++RskKnell+++ie++qk+e elq++n++Lr+k++e XP_028062219.1 103 GSVSEANTQFYQQESTKLRRQIKDIQNSNRHILGEALSSLTFKELKNLESRLEKAISRVRSKKNELLFAEIEHMQKREIELQNANMYLRAKIAE 196 3489***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MQPLWKMMVF PNQESEEGSS QRKMGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV 60 LCDAEVALIV FSSRGRLYEY ANNSVRATIE RYKKACSDVP NTGSVSEANT QFYQQESTKL 120 RRQIKDIQNS NRHILGEALS SLTFKELKNL ESRLEKAISR VRSKKNELLF AEIEHMQKRE 180 IELQNANMYL RAKIAENERA QQQEQEQEQM NLMPAGGGGG GGMGAYDARN FFPVNLLEPS 240 PPPPNHHYSC HDQTQLQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-115	MIKC_MADS family protein