PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028062220.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28035.8 Da    PI: 9.5441
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028062220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-313281150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_028062220.1 32 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 81
                    79***********************************************8 PP
2K-box92.57.5e-31103193797
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++ea+++ +qqe++kL+++i+ +q+++Rh+lGe L+sL++keL++Le++Lek+++++RskKnell+++ie++qk+  e+++++++ +++
  XP_028062220.1 103 GSVSEANTQFYQQESTKLRRQIKDIQNSNRHILGEALSSLTFKELKNLESRLEKAISRVRSKKNELLFAEIEHMQKRIAENERAQQQEQEQ 193
                     3489**************************************************************************9999999876665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MQPLWKMMVF PNQESEEGSS QRKMGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV  60
LCDAEVALIV FSSRGRLYEY ANNSVRATIE RYKKACSDVP NTGSVSEANT QFYQQESTKL  120
RRQIKDIQNS NRHILGEALS SLTFKELKNL ESRLEKAISR VRSKKNELLF AEIEHMQKRI  180
AENERAQQQE QEQEQMNLMP AGGGGGGGMG AYDARNFFPV NLLEPSPPPP NHHYSCHDQT  240
QLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-103MIKC_MADS family protein