PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062463.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 419aa MW: 48116.4 Da PI: 7.9561

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.3	9.4e-17	19	72	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 r++R ++++++++ Le++Fe++++p++++r +L k++gLt q+k+WFqN+R+ XP_028062463.1 19 RKRRYRHSPYETQMLETFFEQCQHPNERQRCQLGKEVGLTPLQIKFWFQNKRTL 72 899*************************************************85 PP
2	START	50.6	5.5e-17	232	362	20	131
T-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT......EEEEE CS START 20 gWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg......galql 93 +W k++ + en+++ ++ + + e +r++++v m+ a+lve lld+++ + + ++ka++l+ + + g lql XP_028062463.1 232 LWIKDPidgrhiiQRENYEKIFSRTS---HlkssrTRFESSREEAIVRMNGAQLVEMLLDSSKrvdLFPTIITKATILQELGNRiprnlsGSLQL 323 78888888884444555555444443...345577899**********************99***************9******* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd 131 + + lsplv Rdf+f+Ry+ ++g+ w+iv+vS d XP_028062463.1 324 VYEQVHILSPLVGpRDFYFLRYCAEMGKNEWMIVEVSYD 362 ********99*********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MVEFMSSEEF ESSSSSRGRK RRYRHSPYET QMLETFFEQC QHPNERQRCQ LGKEVGLTPL 60 QIKFWFQNKR TLVKTQNEKT EGHALRAENE RLKIENIAAR EMLKDEYCKA CKGISCTKED 120 HLHQLRLENC QLNDKYEYLC DLLATMGISV SKNPSLQRLP SIGSSSDGSE NFLGKRMRGL 180 SLGSSSNGSE NSVDHTLKSQ LKQVQDSDTL RMVQTVSNAI DELTSLFIMD RLWIKDPIDG 240 RHIIQRENYE KIFSRTSHLK SSRTRFESSR EEAIVRMNGA QLVEMLLDSS KRVDLFPTII 300 TKATILQELG NRIPRNLSGS LQLVYEQVHI LSPLVGPRDF YFLRYCAEMG KNEWMIVEVS 360 YDIFDKIESS TQQQDQHHHQ PHSSSASPSA PPPSHSWRLP SGCLIRDLNN GCSRSGHLI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MVEFMSSEEF ESSSSSRGRK RRYRHSPYET QMLETFFEQC QHPNERQRCQ LGKEVGLTPL  60
QIKFWFQNKR TLVKTQNEKT EGHALRAENE RLKIENIAAR EMLKDEYCKA CKGISCTKED  120
HLHQLRLENC QLNDKYEYLC DLLATMGISV SKNPSLQRLP SIGSSSDGSE NFLGKRMRGL  180
SLGSSSNGSE NSVDHTLKSQ LKQVQDSDTL RMVQTVSNAI DELTSLFIMD RLWIKDPIDG  240
RHIIQRENYE KIFSRTSHLK SSRTRFESSR EEAIVRMNGA QLVEMLLDSS KRVDLFPTII  300
TKATILQELG NRIPRNLSGS LQLVYEQVHI LSPLVGPRDF YFLRYCAEMG KNEWMIVEVS  360
YDIFDKIESS TQQQDQHHHQ PHSSSASPSA PPPSHSWRLP SGCLIRDLNN GCSRSGHLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-61	HD-ZIP family protein