PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028062485.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LSD
Protein Properties Length: 139aa    MW: 14618.9 Da    PI: 8.4965
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028062485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.25.7e-13731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr +L YPrGA++V+CalC+++
  XP_028062485.1  7 CSGCRSILLYPRGASNVCCALCNAI 31
                    ***********************97 PP
2zf-LSD1499.9e-164770124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    Cg+Crt+L+YP+GApsV+Ca+C+ 
  XP_028062485.1 47 CGNCRTTLMYPYGAPSVKCAICHY 70
                    **********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MQSQIVCSGC RSILLYPRGA SNVCCALCNA ITSVPPPASN QLAHVNCGNC RTTLMYPYGA  60
PSVKCAICHY ITNVNMGNVR VPIPMHRPNG ATTPASMPST SAAMPHSQTQ TVVVENPMSV  120
DESGKLVSNV VVGVTTDKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.24e-52LSD family protein