PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062859.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 668aa MW: 73579.8 Da PI: 6.3373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	489	534	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_028062859.1 489 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 534 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MTDYRLPTMN LWTDDNASMM EAFMTSDLTS FWPPPPSSSA STSAVAANHH PPPPPPPQPP 60 SPPPQIFNQE SLQQRLHALI EGARESWTYA IFWQSSVVDY SGGSMLGWGD GYYKGEEDKG 120 KRKAAAPSSV AEQLHRKKVL RELNSLISGA SPSADDSVDE EVTDTEWFFL VSMTQSFVNG 180 SGLPGQAFFN SSSIWVAGAE RLAGSACERV RQGQVFGLQT MVCIPCSNGV VEVGSTELIF 240 QTSDLMNKVR FLFNFNSTEL GSWSIPAEND PSAMYITDPS SSVVELREST PIIPSHNQQY 300 SKQNGVENPS SSTVTETPSS IHVHNHSSHH QNQPPHQLTH AQTQSSFTRE LNFSEFGYDG 360 TSVRNGNSQS CKPESGDILN FGESKRSSCS GNGNLFSNHS QFGGVEENKK KRSPTSRGSN 420 DEGMLSFTSG VILPSSGMVK SSGCGGDSDH SDLEASVARE VESSRVPDPE KRPRKRGRKP 480 ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELKSKLQT 540 SESDKEEMRN QIESLKRELS VKESRFSGPP PPDQDLKMSN NGTKLQDIDI DVKIIGWDAM 600 IRIQCSKKNH PAARLMSALK ELDLDVHHAS VSVVNDLMIQ QATVKMGSRF YTQEQLRMAL 660 SSKIGDSR

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MTDYRLPTMN LWTDDNASMM EAFMTSDLTS FWPPPPSSSA STSAVAANHH PPPPPPPQPP  60
SPPPQIFNQE SLQQRLHALI EGARESWTYA IFWQSSVVDY SGGSMLGWGD GYYKGEEDKG  120
KRKAAAPSSV AEQLHRKKVL RELNSLISGA SPSADDSVDE EVTDTEWFFL VSMTQSFVNG  180
SGLPGQAFFN SSSIWVAGAE RLAGSACERV RQGQVFGLQT MVCIPCSNGV VEVGSTELIF  240
QTSDLMNKVR FLFNFNSTEL GSWSIPAEND PSAMYITDPS SSVVELREST PIIPSHNQQY  300
SKQNGVENPS SSTVTETPSS IHVHNHSSHH QNQPPHQLTH AQTQSSFTRE LNFSEFGYDG  360
TSVRNGNSQS CKPESGDILN FGESKRSSCS GNGNLFSNHS QFGGVEENKK KRSPTSRGSN  420
DEGMLSFTSG VILPSSGMVK SSGCGGDSDH SDLEASVARE VESSRVPDPE KRPRKRGRKP  480
ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELKSKLQT  540
SESDKEEMRN QIESLKRELS VKESRFSGPP PPDQDLKMSN NGTKLQDIDI DVKIIGWDAM  600
IRIQCSKKNH PAARLMSALK ELDLDVHHAS VSVVNDLMIQ QATVKMGSRF YTQEQLRMAL  660
SSKIGDSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	479	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein