PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062952.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 463aa MW: 50567.2 Da PI: 4.9333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.4	4e-06	354	391	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L XP_028062952.1 354 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 391 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MAEEFQAGVC GTTTWWNMPR SSHGLLSQCS VAINNDVGSF GFGWASDDDL VDMNKARSGG 60 GTSTDESGGS VCDGSIVFQD ILKPHGEQPP PDSGGKVLMD STLQMMGIGL SSSSSSTTTD 120 WNQTLLGDGR SESNYQSSML QEDMNSRLNF RQETRIDCPQ IQREWSMKNF SIAGGQDSTI 180 NEFKPANQSL NSEISSSQGL PASFPMSSAS FGYPSTLLQT LFDTDPQPQQ SIFNNRSMNY 240 PSSTNYATNL NEFSPSLAKL SSLLGPSLPK QQPISPLNST NNVPFWNAST AALNDFRFLA 300 STFDEKSSCP NLATKPNSEV VQDPASVVKK SSSEPAFKKQ RIETPSPLPT FKVRKEKLGD 360 RITALQQLVS PFGKTDTASV LQEAIEYIKF LHEQVGVLRT PYMKNGAPIQ HQETSDKLKD 420 SEGPKQDLRS RGLCLVPISS TYPVANETTT EFWTPTFGGT FRR

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MAEEFQAGVC GTTTWWNMPR SSHGLLSQCS VAINNDVGSF GFGWASDDDL VDMNKARSGG  60
GTSTDESGGS VCDGSIVFQD ILKPHGEQPP PDSGGKVLMD STLQMMGIGL SSSSSSTTTD  120
WNQTLLGDGR SESNYQSSML QEDMNSRLNF RQETRIDCPQ IQREWSMKNF SIAGGQDSTI  180
NEFKPANQSL NSEISSSQGL PASFPMSSAS FGYPSTLLQT LFDTDPQPQQ SIFNNRSMNY  240
PSSTNYATNL NEFSPSLAKL SSLLGPSLPK QQPISPLNST NNVPFWNAST AALNDFRFLA  300
STFDEKSSCP NLATKPNSEV VQDPASVVKK SSSEPAFKKQ RIETPSPLPT FKVRKEKLGD  360
RITALQQLVS PFGKTDTASV LQEAIEYIKF LHEQVGVLRT PYMKNGAPIQ HQETSDKLKD  420
SEGPKQDLRS RGLCLVPISS TYPVANETTT EFWTPTFGGT FRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	4e-57	bHLH family protein