PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028063164.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 484aa MW: 53276.6 Da PI: 5.9893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028063164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	309	354	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L XP_028063164.1 309 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 354 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MADLIISSSS SSSFVSSSSH ENPPPTLQQR LQLILQTQPD WWVYAIFWQS STDHNGRLFL 60 SWLDGRFQGT KHSSSSSLSL PPTKPIRDRK TKLTRPLPSI LTTCQQNSPS DGDGDVTAAE 120 WFYSMSLTRS FSAGDGVPGK SFSSGSLVWL CGGHQLKFYN CERAKEAQIH GIETFVCIPT 180 CNGVVELGSS DVIKENWGLV QQAKSLFGSD LPKQLPNTSN NGSGSVHFLE RNISFADIGI 240 VAGLQDDDDS FDNNNINNIN INVINKRETN AESELSDSDC PLVAAHEQQK AAPKKRGRKP 300 GVGRETPLNH VEAERQRREK LNHRFYALRA VVPNVSRMDK ASLLSDAVSY INELKAKVEE 360 LEAQQVQVER ELKKVKTEVA DTTADNQSAT TSVEQIRTAN NSESGGLEVE VKIVGSDAMI 420 RVQSDNSNYP AARLMDALRD LELPVYHASM SSVNHLMLQD VVIRAPDGFS TEDGLKAALL 480 TRFV

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MADLIISSSS SSSFVSSSSH ENPPPTLQQR LQLILQTQPD WWVYAIFWQS STDHNGRLFL  60
SWLDGRFQGT KHSSSSSLSL PPTKPIRDRK TKLTRPLPSI LTTCQQNSPS DGDGDVTAAE  120
WFYSMSLTRS FSAGDGVPGK SFSSGSLVWL CGGHQLKFYN CERAKEAQIH GIETFVCIPT  180
CNGVVELGSS DVIKENWGLV QQAKSLFGSD LPKQLPNTSN NGSGSVHFLE RNISFADIGI  240
VAGLQDDDDS FDNNNINNIN INVINKRETN AESELSDSDC PLVAAHEQQK AAPKKRGRKP  300
GVGRETPLNH VEAERQRREK LNHRFYALRA VVPNVSRMDK ASLLSDAVSY INELKAKVEE  360
LEAQQVQVER ELKKVKTEVA DTTADNQSAT TSVEQIRTAN NSESGGLEVE VKIVGSDAMI  420
RVQSDNSNYP AARLMDALRD LELPVYHASM SSVNHLMLQD VVIRAPDGFS TEDGLKAALL  480
TRFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	9e-68	bHLH family protein