PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028063702.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 298aa    MW: 33890.2 Da    PI: 5.4519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028063702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_028063702.1 25 KGPWTLEEDTLLIHYIAGHGEGRWNLLAKCAGLKRTGKSCRLRWLNYL 72
                     79********************************************97 PP
2Myb_DNA-binding52.71e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_028063702.1  78 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MSTAMSTVTQ RGSNNGSEEE FELRKGPWTL EEDTLLIHYI AGHGEGRWNL LAKCAGLKRT  60
GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKQARQL KIESNSKRFL EAVRCFWMPR LLEQVEQTSS SSPSSSTMET QSSTITSSLL  180
PNHEAPLAFS SPQPNEKPSS VTNSSTICFS DSMRISQLPE FLERPTSPPL DDCYFVDISG  240
YDMEVFNLAT MSSVGPCDFS LSDSQMAGSD WISDDVACTL WNMDELWQLR KPEEELGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-87MYB family protein