PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028063940.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26479.1 Da PI: 4.462

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028063940.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	30	81	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 f+++q++ Le++Fe+++++ +++ + A++lgL+ rqV +WFqN+Ra++k XP_028063940.1 30 NXFSDDQIRSLETMFESESKLEPRKKMQVARELGLQPRQVGIWFQNKRARWK 81 579************************************************9 PP
2	HD-ZIP_I/II	113.6	1.2e-36	30	119	4	93
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +s++q+++LE++Fe+e+kLep++K+++areLglqprqv +WFqn+RAR+k+kqlE+dy++L++ y +l+++ e+L+ke+++L +l++ XP_028063940.1 30 NXFSDDQIRSLETMFESESKLEPRKKMQVARELGLQPRQVGIWFQNKRARWKSKQLERDYSVLRADYTTLVSQFEALKKEKQALVLQLQK 119 5699********************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MMMDGGEYSA DYLSRSNSVS KKKRNKNQNN XFSDDQIRSL ETMFESESKL EPRKKMQVAR 60 ELGLQPRQVG IWFQNKRARW KSKQLERDYS VLRADYTTLV SQFEALKKEK QALVLQLQKL 120 NDLMQKSRPE DNLGCRQGVP ENNSIGDRLD SGEDFKTEFA VKPSLSMEDD DNSNIEAKYF 180 GIDEEPELLN MAEVEPADSS LTSPENWGGF DSDGLLDQSG SSDQWWDFWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	5e-56	HD-ZIP family protein