PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028064238.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 153aa MW: 16942 Da PI: 7.7699

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028064238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.7e-44	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++ap+fp e+p+kfan+hk+FGasn++kll+++ +++r+da+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l+++l+ XP_028064238.1 10 PCAACKFLRRKCIPGCIFAPHFPPEDPQKFANIHKIFGASNISKLLNEILPHQRDDAVSSLAYEAEARVRDPVYGCVGAISFLQRQVEKLQKDLE 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_028064238.1 105 VANAN 109 98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence
MASSSSYTSP CAACKFLRRK CIPGCIFAPH FPPEDPQKFA NIHKIFGASN ISKLLNEILP 60 HQRDDAVSSL AYEAEARVRD PVYGCVGAIS FLQRQVEKLQ KDLEVANANL IHCVCNEPAL 120 PRRMGNEGYQ TXSFPFPYSL PWNDHNSPSG GNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	2e-67	LBD family protein