PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028064640.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29469.6 Da    PI: 5.7677
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028064640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-283787151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr+g++KKAeELSvLCda+va+iifs tgkl+e+ss
  XP_028064640.1 37 KKIDNVTARQVTFSKRRKGLFKKAEELSVLCDADVALIIFSATGKLFEFSS 87
                    68***********************************************96 PP
2K-box56.89.8e-2012120120100
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++L ke+ +  +++R++ Ge+L  Ls++eLqqLe+ Le +l+++  kK e ++++i++lq+ke el een++Lr++++e
  XP_028064640.1 121 NFSRLSKEVAEKSHQLRQMRGEELPGLSIEELQQLERSLEAGLSHVIGKKGEKIMKEISNLQQKEMELMEENERLRQQVKE 201
                     67899999999999****************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGVFLIAHYY LSIYIYIFEE RERLLYIEMA REKIQIKKID NVTARQVTFS KRRKGLFKKA  60
EELSVLCDAD VALIIFSATG KLFEFSSSSM TEILERRNLH SKNLDKLDQP SLELQLVENS  120
NFSRLSKEVA EKSHQLRQMR GEELPGLSIE ELQQLERSLE AGLSHVIGKK GEKIMKEISN  180
LQQKEMELME ENERLRQQVK EVSNARKHVA VATDSENMYI NEEGQSSESV NICNSTSPPQ  240
DYDSSVTSLK LGLPYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-92MIKC_MADS family protein