PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028065159.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28050.9 Da    PI: 8.4714
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028065159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +iifs +gkl+eys+
  XP_028065159.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIIFSAKGKLFEYST 59
                    79***********************************************96 PP
2K-box95.67.8e-32791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++   + +++ e+ kLk+++e L+r+qRh++GedL++Ls+keLq+Le+qL+++lk+ Rs+Kn+l+ e+i+elqkk k+l eenk L kk++
  XP_028065159.1  79 QLVAADIDSQGRWTLEHVKLKARLEVLERNQRHFMGEDLDTLSVKELQSLEHQLDSALKHLRSRKNQLMNESISELQKKDKALLEENKLLAKKIK 173
                     555555566789*********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_028065159.1 174 E 174
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGKVELKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIIFSA KGKLFEYSTT  60
SCMERILERY ERYSYAERQL VAADIDSQGR WTLEHVKLKA RLEVLERNQR HFMGEDLDTL  120
SVKELQSLEH QLDSALKHLR SRKNQLMNES ISELQKKDKA LLEENKLLAK KIKEKEEKEL  180
ARHAQLEQQN HDQNSSSVDL SQPLHSLDIG GAYQAAAGSN GDVEGAPFQT QNGSVMPPWM  240
ICHING
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-92MIKC_MADS family protein