PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028065176.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 568aa MW: 62383.6 Da PI: 6.2417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028065176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.6e-16	350	396	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_028065176.1 350 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 396 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MQINDRFLNL DFNCGINSEI HAAMNNCVPD FEMDEDYSIP TSSGLTRPKK SLMAEEEIME 60 LLWQNGQVVM QSQNQRSIKR SDIGDAVTPA EQSAARDIRP EEESTTQLFM QEDEMASWLN 120 YPNDDSSFYR DFYADLVYPA PTSPVDPLAH TTPIPELKIP PPSEAAAISR PPIAPPKRAE 180 LEHSARFQNF VHFWRTKGTE PGPSISNKAV RESTVVDSSE TPAAAAQESR ASHFAGCAKP 240 AQISGVNVGC GSMRGGGATA AGTTSSGGRE IRTCDLTLTS SPGGSGASMS ASAEPVSKPP 300 PPTTTMTTED RKRKGREVDD TECQSEDVYP DAKKQVRGST STKRSRAAEV HNLSERRRRD 360 RINEKMKALQ ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGCSMVP LMFPGVQQYM 420 PPMGMGMGMG MGMGMGMEMG MSRPMMPFPS VLAGSALPTR AAASHLAPRF PVPAFHMPPL 480 PVHDPSRIQV PSQTQPMLNH DPNQPRMPSF PDPYQQYLGF HHTQVPMPQN QQMMQPSSSK 540 PSSSREVENH ENLHSGGPPL LLAHLYCY

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MQINDRFLNL DFNCGINSEI HAAMNNCVPD FEMDEDYSIP TSSGLTRPKK SLMAEEEIME  60
LLWQNGQVVM QSQNQRSIKR SDIGDAVTPA EQSAARDIRP EEESTTQLFM QEDEMASWLN  120
YPNDDSSFYR DFYADLVYPA PTSPVDPLAH TTPIPELKIP PPSEAAAISR PPIAPPKRAE  180
LEHSARFQNF VHFWRTKGTE PGPSISNKAV RESTVVDSSE TPAAAAQESR ASHFAGCAKP  240
AQISGVNVGC GSMRGGGATA AGTTSSGGRE IRTCDLTLTS SPGGSGASMS ASAEPVSKPP  300
PPTTTMTTED RKRKGREVDD TECQSEDVYP DAKKQVRGST STKRSRAAEV HNLSERRRRD  360
RINEKMKALQ ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGCSMVP LMFPGVQQYM  420
PPMGMGMGMG MGMGMGMEMG MSRPMMPFPS VLAGSALPTR AAASHLAPRF PVPAFHMPPL  480
PVHDPSRIQV PSQTQPMLNH DPNQPRMPSF PDPYQQYLGF HHTQVPMPQN QQMMQPSSSK  540
PSSSREVENH ENLHSGGPPL LLAHLYCY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	355	360	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	3e-75	bHLH family protein